AMDirT
stable
Contents:
Install
More information
Tutorials
How Tos
Quick Reference
Python API
AMDirT
Index
Edit on GitHub
Index
Symbols
|
_
|
A
|
B
|
C
|
D
|
E
|
L
|
M
|
Q
|
R
|
S
|
T
|
V
Symbols
--ameta
AMDirT-convert command line option
--aspera
AMDirT-convert command line option
--bibliography
AMDirT-convert command line option
--columns
AMDirT-validate command line option
--curl
AMDirT-convert command line option
--doi
AMDirT-validate command line option
--eager
AMDirT-convert command line option
--fetchngs
AMDirT-convert command line option
--libraries
AMDirT-convert command line option
--library_output
AMDirT-autofill command line option
--librarymetadata
AMDirT-convert command line option
--line_dup
AMDirT-validate command line option
--mag
AMDirT-convert command line option
--markdown
AMDirT-merge command line option
AMDirT-validate command line option
--multi_values
AMDirT-validate command line option
--online_archive
AMDirT-validate command line option
--outdir
AMDirT-merge command line option
--output
AMDirT-convert command line option
AMDirT-download command line option
--release
AMDirT-download command line option
--remote
AMDirT-validate command line option
--sample_output
AMDirT-autofill command line option
--schema_check
AMDirT-validate command line option
--sratoolkit
AMDirT-convert command line option
--table
AMDirT-download command line option
--table_name
AMDirT-autofill command line option
AMDirT-merge command line option
--table_type
AMDirT-download command line option
AMDirT-merge command line option
--tables
AMDirT-convert command line option
AMDirT-viewer command line option
--taxprofiler
AMDirT-convert command line option
--verbose
AMDirT command line option
--version
AMDirT command line option
-a
AMDirT-validate command line option
-c
AMDirT-validate command line option
-d
AMDirT-validate command line option
-i
AMDirT-validate command line option
-l
AMDirT-autofill command line option
-m
AMDirT-merge command line option
AMDirT-validate command line option
-n
AMDirT-autofill command line option
AMDirT-merge command line option
-o
AMDirT-convert command line option
AMDirT-download command line option
AMDirT-merge command line option
-r
AMDirT-download command line option
-s
AMDirT-autofill command line option
AMDirT-validate command line option
-t
AMDirT-convert command line option
AMDirT-download command line option
AMDirT-merge command line option
AMDirT-viewer command line option
-y
AMDirT-download command line option
_
__get_json__() (AMDirT.core.ena.ENABrowserAPI method)
(AMDirT.core.ena.ENAPortalAPI method)
__init__() (AMDirT.core.ena.ENABrowserAPI method)
(AMDirT.core.ena.ENAPortalAPI method)
(AMDirT.validate.application.AMDirValidator method)
__repr__() (AMDirT.core.ena.ENABrowserAPI method)
(AMDirT.core.ena.ENAPortalAPI method)
(AMDirT.validate.application.AMDirValidator method)
__weakref__ (AMDirT.core.ena.ENABrowserAPI attribute)
(AMDirT.core.ena.ENAPortalAPI attribute)
(AMDirT.validate.application.AMDirValidator attribute)
A
ACCESSION
AMDirT-autofill command line option
AMDirT command line option
--verbose
--version
AMDirT-autofill command line option
--library_output
--sample_output
--table_name
-l
-n
-s
ACCESSION
AMDirT-convert command line option
--ameta
--aspera
--bibliography
--curl
--eager
--fetchngs
--libraries
--librarymetadata
--mag
--output
--sratoolkit
--tables
--taxprofiler
-o
-t
SAMPLES
TABLE_NAME
AMDirT-download command line option
--output
--release
--table
--table_type
-o
-r
-t
-y
AMDirT-merge command line option
--markdown
--outdir
--table_name
--table_type
-m
-n
-o
-t
DATASET
AMDirT-validate command line option
--columns
--doi
--line_dup
--markdown
--multi_values
--online_archive
--remote
--schema_check
-a
-c
-d
-i
-m
-s
DATASET
SCHEMA
AMDirT-viewer command line option
--tables
-t
AMDirValidator (class in AMDirT.validate.application)
B
base_url (AMDirT.core.ena.ENAPortalAPI attribute)
C
check_columns() (AMDirT.validate.application.AMDirValidator method)
check_duplicate_rows() (AMDirT.validate.application.AMDirValidator method)
check_multi_values() (AMDirT.validate.application.AMDirValidator method)
check_sample_accession() (AMDirT.validate.application.AMDirValidator method)
cleanup_errors() (AMDirT.validate.application.AMDirValidator method)
D
DATASET
AMDirT-merge command line option
AMDirT-validate command line option
dataset (AMDirT.validate.application.AMDirValidator attribute)
dataset_json (AMDirT.validate.application.AMDirValidator attribute)
dataset_name (AMDirT.validate.application.AMDirValidator attribute)
dataset_to_json() (AMDirT.validate.application.AMDirValidator method)
doc() (AMDirT.core.ena.ENABrowserAPI method)
(AMDirT.core.ena.ENAPortalAPI method)
E
ENABrowserAPI (class in AMDirT.core.ena)
ENAPortalAPI (class in AMDirT.core.ena)
errors (AMDirT.validate.application.AMDirValidator attribute)
L
list_fields() (AMDirT.core.ena.ENAPortalAPI method)
list_results() (AMDirT.core.ena.ENAPortalAPI method)
M
merge_new_df() (in module AMDirT.merge)
Q
query() (AMDirT.core.ena.ENAPortalAPI method)
R
read_dataset() (AMDirT.validate.application.AMDirValidator method)
read_schema() (AMDirT.validate.application.AMDirValidator method)
run_app() (in module AMDirT.viewer)
run_autofill() (in module AMDirT.autofill)
run_convert() (in module AMDirT.convert)
S
SAMPLES
AMDirT-convert command line option
SCHEMA
AMDirT-validate command line option
schema (AMDirT.validate.application.AMDirValidator attribute)
schema_name (AMDirT.validate.application.AMDirValidator attribute)
status() (AMDirT.core.ena.ENABrowserAPI method)
(AMDirT.core.ena.ENAPortalAPI method)
T
TABLE_NAME
AMDirT-convert command line option
to_markdown() (AMDirT.validate.application.AMDirValidator method)
to_rich() (AMDirT.validate.application.AMDirValidator method)
V
validate_schema() (AMDirT.validate.application.AMDirValidator method)
Read the Docs
v: stable
Versions
master
latest
stable
1.6.0
1.5.0
dev
Downloads
On Read the Docs
Project Home
Builds