Source code for amdirt.viewer

# from amdirt import logger
import sys
from streamlit.web import cli as stcli
from pathlib import Path
from amdirt.core import get_json_path, logger
import warnings




def run_app(tables=None, verbose=False):
    """
    Run the amdirt interactive filtering application

    Args:
        tables (str): path to JSON file listing AncientMetagenomeDir tables
    """
    if not warnings:
        warnings.filterwarnings("ignore")
    directory = Path(__file__).parent.resolve()
    app = "streamlit.py"
    if tables is None:
        config_path = get_json_path()
    else:
        config_path = tables
    app_path = f"{directory}/{app}"

    sys.argv = [
        "streamlit", 
        "run", 
        app_path, 
        "--", 
        "--config", 
        config_path
    ]
    logger.info("\n[amdirt] To close app, press on your keyboard: ctrl+c\n")
    sys.exit(stcli.main())