DOI PyPI version Documentation Status AMDirT-CI


AMDirT: AncientMetagenomeDir Toolkit


Before we release AMDirt on (bio)Conda, please follow the instructions below.

1. With pip

…upon release of v 1.4

2. With conda

…upon release of v 1.4

The latest development version, directly from GitHub

pip install --upgrade --force-reinstall git+

The latest development version, with local changes

  • Fork AMDirT on GitHub

  • Clone your fork git clone [your-AMDirT-fork]

  • Checkout the dev branch git switch dev

  • Create the conda environment conda env create -f environment.yml

  • Activate the environemnt conda activate amdirt

  • Install amdirt in development mode pip install -e .