viewer

On this page we provide step-by-step video tutorials on how to use the AMDirT graphical-user-interface (GUI) of the viewer command.

ℹ️ The viewer subcommand was previously known as filter.

The full walkthrough of all steps in a single video can be seen at the end of this page.

Loading AMDirT viewer

This tutorial shows how to activate a pre-created conda environment from a command-line interface, and load the graphical-user interface (GUI) in your browser.

Selecting Table

This tutorial shows you how to select which release of AncientMetagenomeDir you wish to explore, as well as how to select the given research-area specific AncientMetagenomeDir table of interest.

Row Selection

This tutorial shows how to increase the number of rows in the tabular view of the GUI.

Column Options

This tutorial shows you how to reorder columns, hide/display columns, and filter columns by the particular specifications of the user.

Selecting Rows

This tutorial shows how to select different rows of interest.

Exporting Information

This tutorial shows how to export the selected data for downstream use, in this case, download scripts and a input table for the nf-core/eager ancient DNA pipeline.

For more detail about all possible output files, please see the corresponding pages on How To.

Full walkthrough

This tutorial has all the above steps in a single video to show the full procedure from beginning to end.